JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CETP_chr16_56956950_56988845	0/0	c0009	1482	5	5	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0010	1482	3	0	0	3	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0011	1482	3	0	1	0	0	2	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0012	1482	3	3	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0013	1482	3	2	1	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0014	1482	2	2	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0015	1482	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0016	1482	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0017	1482	1	0	0	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0018	1482	1	0	0	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0019	1482	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0020	1482	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0021	1482	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0022	1482	1	0	0	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0023	1482	1	0	1	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0024	1482	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0025	1482	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0026	1482	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	c0027	1482	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CFAP100_chr3_126389909_126441556	1/0	c0001	1836	250	39	51	127	10	22	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0002	1836	65	6	16	19	5	19	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0003	1836	25	22	3	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0004	1836	18	1	0	16	0	1	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0005	1833	11	0	6	1	1	3	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0006	1836	10	0	0	10	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0007	1836	6	6	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0008	1836	5	0	0	5	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0009	1836	5	5	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0010	1836	3	1	2	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0011	1836	3	3	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0012	1836	2	2	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0013	1836	2	2	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0014	1836	2	0	0	2	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0015	1836	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0016	1836	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0017	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0018	1836	1	0	0	0	0	1	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0019	1836	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0020	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0021	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0022	1836	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0023	1836	1	0	1	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0024	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0025	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0026	1836	1	0	1	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/1	c0027	1836	1	0	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0028	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	c0029	1836	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP107_chr1_12741200_12768699	1/0	c0001	585	247	66	43	94	13	30	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/1	c0002	585	68	7	15	32	4	9	copy fasta	CFAP107	chr1	12741200	12768699