Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTR5_chr20_38743460_38777520	0/0	c0002	1824	110	23	17	51	4	15	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0003	1824	61	23	6	24	3	5	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0004	1824	4	0	4	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0005	1824	4	4	0	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0006	1824	3	0	1	2	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0007	1824	3	0	0	3	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0008	1824	3	0	0	0	1	2	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0009	1824	2	2	0	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0010	1824	1	0	1	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0011	1824	1	0	1	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	c0012	1824	1	0	0	1	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR6_chr12_100195815_100229424	1/1	c0001	1191	226	80	42	68	10	24	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	c0002	1191	6	6	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	c0003	1191	6	0	0	6	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	c0004	1191	2	2	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	c0005	1191	1	1	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR8_chr3_53862066_53887152	0/0	c0001	1875	264	36	32	164	6	26	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	1/1	c0002	1875	77	27	25	8	5	10	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0003	1875	68	12	14	37	1	4	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0004	1875	17	17	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0005	1875	3	0	3	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0006	1875	1	0	0	1	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0007	1875	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	c0008	1875	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTRT1_chrX_128045962_128057403	1/1	c0001	1131	269	66	52	117	8	24	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0002	1131	5	4	1	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0003	1131	3	0	3	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0004	1131	3	0	1	1	0	1	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0006	1127	1	1	0	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0008	1131	1	0	0	1	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT1_chrX_128045962_128057403	0/0	c0009	1131	1	1	0	0	0	0	copy fasta	ACTRT1	chrX	128045962	128057403
ACTRT2_chr1_3016467_3027903	1/1	c0001	1134	196	58	49	54	8	25	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0002	1131	59	1	19	35	3	1	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0003	1134	41	0	6	28	3	4	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0004	1134	40	9	0	28	0	3	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0005	1134	11	10	1	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0006	1134	7	4	3	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0007	1134	5	5	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0009	1134	1	0	0	0	0	1	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0010	1134	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0013	1134	1	0	0	1	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT2_chr1_3016467_3027903	0/0	c0014	1134	1	0	0	1	0	0	copy fasta	ACTRT2	chr1	3016467	3027903
ACTRT3_chr3_169761921_169774561	1/1	c0001	1119	362	66	70	171	14	39	copy fasta	ACTRT3	chr3	169761921	169774561
ACTRT3_chr3_169761921_169774561	0/0	c0002	1119	28	10	2	14	0	2	copy fasta	ACTRT3	chr3	169761921	169774561