JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP107_chr1_12741200_12768699	0/0	c0003	585	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0004	585	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0005	585	5	4	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0006	585	2	1	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0007	585	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0008	585	1	0	0	0	0	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0009	585	1	0	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	c0010	474	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP119_chr16_30752423_30767062	1/1	c0001	996	258	75	58	82	16	25	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0002	996	2	1	1	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0003	996	1	1	0	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0004	996	1	1	0	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0005	996	1	0	0	0	0	1	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0006	996	1	0	1	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0007	996	1	0	1	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	c0008	996	1	0	1	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP126_chr1_161359733_161372876	1/1	c0001	534	345	86	58	145	14	40	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	c0002	534	2	0	0	2	0	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	c0003	534	1	0	0	0	1	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	c0004	534	1	0	0	0	1	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	c0005	534	1	0	0	1	0	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP141_chr1_154194085_154211333	1/0	c0001	306	358	95	64	148	13	37	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	c0002	306	10	1	6	0	1	2	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	c0003	306	2	0	0	2	0	0	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	c0004	306	1	0	0	0	0	1	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/1	c0005	306	1	0	0	0	0	0	copy fasta	CFAP141	chr1	154194085	154211333
CFAP144_chr1_43142904_43161396	1/0	c0001	405	358	92	67	150	11	37	copy fasta	CFAP144	chr1	43142904	43161396
CFAP144_chr1_43142904_43161396	0/1	c0002	405	34	3	14	0	5	11	copy fasta	CFAP144	chr1	43142904	43161396
CFAP144_chr1_43142904_43161396	0/0	c0003	405	3	2	1	0	0	0	copy fasta	CFAP144	chr1	43142904	43161396
CFAP144_chr1_43142904_43161396	0/0	c0004	405	1	1	0	0	0	0	copy fasta	CFAP144	chr1	43142904	43161396
CFAP157_chr9_127701988_127721002	0/1	c0001	1563	152	36	41	39	6	29	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	1/0	c0002	1563	137	13	27	74	7	15	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0003	1563	14	14	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0004	1563	12	0	0	12	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0005	1563	7	7	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0006	1563	6	6	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0007	1563	5	5	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0008	1564	4	1	2	0	0	1	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0009	1563	4	3	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0010	1563	2	0	0	2	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0011	1563	2	2	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0012	1564	2	0	2	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0013	1563	2	0	0	1	0	1	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0014	1563	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0015	1563	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0016	1563	1	0	0	0	1	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0017	1563	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	c0018	1563	1	0	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP161_chr15_81129270_81154179	1/1	c0001	906	406	96	72	183	8	45	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	c0002	906	36	0	5	30	0	1	copy fasta	CFAP161	chr15	81129270	81154179