JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP161_chr15_81129270_81154179	0/0	c0003	906	3	3	0	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	c0004	906	1	1	0	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	c0005	906	1	0	0	1	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	c0006	906	1	0	1	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP206_chr6_87402972_87469465	1/0	c0001	1869	289	64	64	119	14	27	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/1	c0002	1869	35	7	7	17	1	2	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0003	1869	22	0	1	17	2	2	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0004	1869	5	3	2	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0005	1869	4	0	1	0	0	3	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0006	1869	4	0	0	4	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0007	1869	3	3	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0008	1869	2	2	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0009	1869	2	0	1	0	1	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0010	1869	2	2	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0011	1869	2	2	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0012	1869	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0013	1869	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0014	1869	1	1	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0015	1869	1	0	0	1	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0016	1869	1	1	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	c0017	1869	1	1	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP20DC_chr3_58737008_59055025	1/1	c0001	2445	108	27	27	38	8	6	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0002	2445	63	14	10	35	0	4	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0003	2445	10	10	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0004	2445	5	5	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0005	2445	4	4	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0006	2445	3	3	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0007	2445	2	1	1	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0008	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0009	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0010	2445	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0011	2445	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0012	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0013	2445	1	0	0	1	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0014	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0015	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	c0016	2445	1	1	0	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20_chr16_58108592_58134381	1/1	c0001	582	399	88	69	184	12	44	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	c0002	582	1	0	1	0	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP210_chr2_169640425_169699405	1/1	c0001	1659	305	58	48	154	11	32	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0002	1659	27	0	0	23	1	3	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0003	1659	18	6	3	4	1	4	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0004	1659	12	10	2	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0005	1659	5	1	0	0	1	3	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0006	1659	4	4	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0007	1659	3	2	1	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0008	1659	3	3	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0009	1653	3	3	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0010	1659	2	2	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0011	1659	2	0	0	2	0	0	copy fasta	CFAP210	chr2	169640425	169699405