JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP210_chr2_169640425_169699405	0/0	c0012	1659	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0013	1659	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0014	1659	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0015	1659	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0016	1659	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	c0017	1659	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP221_chr2_119539449_119661661	0/0	c0001	2523	102	23	18	50	1	10	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0002	2523	44	18	13	9	1	3	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0003	2523	38	6	7	19	0	6	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0004	2523	10	7	1	1	0	1	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0005	2523	8	6	0	2	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0006	2523	4	4	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0007	2523	4	4	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/1	c0008	2523	3	0	1	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0009	2523	3	3	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0010	2523	3	3	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	1/0	c0011	2523	2	1	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0012	2523	2	1	1	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0013	2523	1	0	0	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0014	2523	1	0	1	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	c0015	2523	1	0	0	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP251_chr12_121913592_122008919	0/0	c0001	3465	107	0	27	61	6	13	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	1/0	c0002	3450	46	6	14	20	2	3	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/1	c0003	3465	40	12	16	0	5	6	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0004	3465	39	6	0	28	0	5	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0005	3465	33	11	2	11	0	9	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0006	3465	30	28	2	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0007	3465	17	0	3	11	0	3	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0008	3465	11	0	0	11	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0009	3465	6	0	0	6	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0010	3465	4	3	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0011	3465	3	2	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0012	3465	3	3	0	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0013	3465	2	0	0	2	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0014	3450	2	0	0	0	0	2	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0015	3465	1	1	0	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0016	3465	1	0	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0017	3465	1	1	0	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0018	3465	1	1	0	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0019	3486	1	0	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0020	3465	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0021	3465	1	0	0	0	1	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0022	3465	1	0	0	1	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0023	3465	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0024	3450	1	0	0	1	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	c0025	3450	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP276_chr1_109100951_109117747	1/1	c0001	510	376	82	70	171	16	35	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0002	510	8	8	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0003	510	7	1	4	0	1	1	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0004	510	5	5	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747