JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP276_chr1_109100951_109117747	0/0	c0005	980	3	1	1	0	1	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0006	981	2	1	1	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0007	510	1	1	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0008	510	1	0	0	1	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	c0009	510	1	1	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP298_chr21_32594354_32617377	1/1	c0001	873	405	90	72	183	18	40	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0002	873	4	4	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0003	873	2	0	0	2	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0004	873	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0005	873	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0006	873	1	0	1	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0007	873	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	c0008	873	1	0	1	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP299_chr4_80330730_80968750	0/0	c0001	702	47	12	5	28	0	2	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0002	702	18	9	3	5	0	1	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0003	702	14	11	3	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0004	702	7	4	1	1	0	1	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0005	702	4	4	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0006	702	3	3	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0007	702	1	1	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0008	702	1	1	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	c0009	702	1	1	0	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP300_chr11_102042437_102089554	1/1	c0001	804	337	69	72	152	6	36	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	c0002	804	4	4	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	c0003	804	4	4	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	c0004	804	1	1	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP36_chr2_55514718_55550079	0/0	c0001	1029	253	58	51	102	14	28	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	1/0	c0002	1029	91	2	7	72	0	9	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/1	c0003	1029	47	30	6	7	0	3	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	c0004	1029	4	4	0	0	0	0	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	c0005	1029	3	0	0	3	0	0	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	c0006	1029	1	0	0	0	0	1	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	c0007	1029	1	0	0	0	0	1	copy fasta	CFAP36	chr2	55514718	55550079
CFAP410_chr21_44323944_44344390	1/1	c0001	771	289	38	53	156	12	28	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0002	771	62	34	9	9	1	9	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0003	771	21	2	10	3	0	6	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0004	771	20	0	1	14	0	5	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0005	771	14	5	3	6	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0006	771	6	4	2	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0007	771	4	4	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0008	771	3	2	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0009	771	3	0	0	3	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0010	771	2	2	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0011	771	2	2	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0012	771	2	0	0	1	0	1	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0013	771	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0014	771	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0015	771	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0016	771	1	0	0	0	0	1	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0017	771	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390