JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP410_chr21_44323944_44344390	0/0	c0018	805	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0019	771	1	0	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	c0020	771	1	0	0	0	1	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP418_chr8_95239913_95274201	1/1	c0001	624	377	83	62	173	14	43	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	c0002	624	4	4	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	c0003	624	3	0	2	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	c0004	624	2	2	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	c0005	624	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	c0006	624	1	0	0	0	0	1	copy fasta	CFAP418	chr8	95239913	95274201
CFAP43_chr10_104124888_104237364	1/0	c0001	4998	225	65	39	100	4	16	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/1	c0002	4998	32	3	3	22	0	3	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0003	4998	10	1	5	0	3	1	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0004	4998	9	0	0	9	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0005	4998	5	0	0	5	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0006	4998	2	2	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0007	4998	2	0	2	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0008	4998	2	1	0	0	1	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0009	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0010	4998	1	0	0	0	0	1	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0011	4998	1	0	0	0	0	1	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0012	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0013	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0014	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0015	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0016	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0017	4998	1	0	1	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0018	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0019	4998	1	0	1	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0020	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0021	4998	1	0	0	1	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0022	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0023	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0024	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0025	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0026	4998	1	1	0	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	c0027	4998	1	0	1	0	0	0	copy fasta	CFAP43	chr10	104124888	104237364
CFAP44_chr3_113281930_113446493	0/0	c0001	5565	110	36	19	37	5	13	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0002	5565	70	1	18	44	1	6	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0003	5565	32	0	6	18	4	4	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0004	5565	23	1	0	18	1	3	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/1	c0005	5565	17	0	0	16	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	1/0	c0006	5565	12	11	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0007	5565	12	9	3	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0008	5565	6	0	4	0	2	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0009	5565	6	4	0	1	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0010	5565	4	4	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0011	5565	4	4	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0012	5565	3	0	3	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0013	5565	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0014	5565	3	0	0	3	0	0	copy fasta	CFAP44	chr3	113281930	113446493