JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP44_chr3_113281930_113446493	0/0	c0015	5565	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0016	5565	3	0	0	3	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0017	5565	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0018	5565	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0019	5565	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0020	5565	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0021	5565	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0022	5565	2	0	0	2	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0023	5565	2	0	0	2	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0024	5565	2	1	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0025	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0026	5565	1	0	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0027	5565	1	0	0	0	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0028	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0029	5565	1	0	0	0	1	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0030	5565	1	0	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0031	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0032	5565	1	0	0	0	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0033	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0034	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0035	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0036	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0037	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0038	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0039	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0040	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0041	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0042	5565	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0043	5565	1	0	0	0	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	c0044	5565	1	0	0	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP45_chr1_159867364_159905165	1/1	c0001	1656	284	36	64	142	12	28	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0002	1656	48	10	3	24	1	10	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0003	1656	34	22	3	8	0	1	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0004	1656	16	14	1	0	1	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0005	1656	6	0	0	6	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0006	1656	4	4	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0007	1656	3	0	0	3	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0008	1656	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0009	1656	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0010	1656	2	2	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0011	1656	1	1	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0012	1712	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0013	1656	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0014	1656	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0015	1656	1	0	1	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0016	1656	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0017	1656	1	0	0	0	0	1	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0018	1656	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	c0019	1656	1	1	0	0	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP46_chr10_132803392_132947570	0/1	c0001	8148	35	0	8	21	3	2	copy fasta	CFAP46	chr10	132803392	132947570