JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP46_chr10_132803392_132947570	0/0	c0052	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0053	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0054	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0055	8148	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0056	8148	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0057	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0058	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0059	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0060	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0061	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0062	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0063	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0064	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0065	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0066	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0067	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0068	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0069	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0070	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0071	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0072	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0073	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0074	8124	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0075	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0076	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0077	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0078	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0079	8148	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0080	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0081	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0082	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0083	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0084	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0085	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0086	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0087	8148	1	0	0	0	1	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0088	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0089	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0090	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0091	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0092	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0093	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0094	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0095	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0096	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0097	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0098	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0099	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0100	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0101	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570