JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP46_chr10_132803392_132947570	0/0	c0102	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0103	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0104	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0105	8148	1	0	0	0	0	1	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0106	8148	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0107	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0108	8148	1	0	0	1	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	c0109	8148	1	1	0	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP47_chrX_35914734_36390317	1/1	c0001	9564	71	2	13	41	3	10	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0002	9564	13	0	0	11	0	2	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0003	9564	11	0	3	7	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0004	9564	8	1	1	4	1	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0005	9564	6	6	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0006	9564	6	6	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0007	9564	5	5	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0008	9564	5	3	0	0	0	2	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0009	9564	5	0	5	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0010	9564	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0011	9564	3	0	2	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0012	9564	3	0	0	2	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0013	9564	2	0	0	1	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0014	9564	2	0	0	0	0	2	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0015	9564	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0016	9564	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0017	9564	2	0	2	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0018	9564	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0019	9564	2	0	0	2	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0020	9564	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0021	9564	2	2	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0022	9564	2	0	0	2	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0023	9564	2	1	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0024	9564	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0025	9564	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0026	9564	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0027	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0028	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0029	9564	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0030	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0031	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0032	9563	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0033	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0034	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0035	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0036	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0037	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0038	9563	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0039	9564	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0040	9564	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0041	9565	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0042	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317