JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP47_chrX_35914734_36390317	0/0	c0043	9564	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0044	9564	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0045	9564	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0046	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0047	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0048	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0049	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0050	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0051	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0052	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0053	9564	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0054	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0055	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0056	9564	1	0	0	0	0	1	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0057	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0058	9564	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0059	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0060	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0061	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0062	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0063	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0064	9564	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0065	9564	1	0	0	0	1	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0066	9565	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0067	9564	1	0	0	1	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0068	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0069	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0070	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0071	9564	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0072	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0073	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0074	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0075	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0076	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0077	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	c0078	9564	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP52_chr17_9571642_9648447	0/1	c0001	1863	149	29	29	61	7	22	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	1/0	c0002	1863	145	47	28	55	4	10	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0003	1863	4	0	0	4	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0004	1863	4	4	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0005	1863	3	3	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0006	1863	2	0	0	2	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0007	1863	1	0	0	0	1	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0008	1863	1	0	0	1	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0009	1863	1	0	1	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0010	1863	1	0	0	1	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0011	1863	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0012	1863	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0013	1863	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	c0014	1863	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447