JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP52_chr17_9571642_9648447	0/0	c0015	1863	1	1	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP53_chr18_50222193_50271495	1/1	c0001	1545	256	73	45	101	10	25	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0002	1545	76	1	11	62	0	2	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0003	1545	47	5	14	9	6	13	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0004	1545	4	4	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0005	1545	3	3	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0006	1545	3	0	3	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0007	1545	2	2	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0008	1545	2	2	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0009	1545	1	0	0	0	0	1	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0010	1545	1	0	1	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0011	1545	1	0	0	0	0	1	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0012	1545	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0013	1545	1	1	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0014	1545	1	1	0	0	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0015	1489	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0016	1545	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP53_chr18_50222193_50271495	0/0	c0017	1545	1	0	0	1	0	0	copy fasta	CFAP53	chr18	50222193	50271495
CFAP54_chr12_96484577_96880555	0/0	c0001	9291	37	14	3	13	4	3	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/1	c0002	9291	27	6	5	12	0	3	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0003	9291	23	8	0	12	2	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0004	9291	11	0	3	8	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0005	9291	10	2	6	0	0	2	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0006	9291	9	1	1	7	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0007	9291	9	0	1	8	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0008	9291	8	0	0	8	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0009	9291	5	0	0	1	1	3	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0010	9291	5	0	5	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0011	9291	4	4	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0012	9291	4	0	1	3	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0013	9291	4	0	4	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0014	9291	3	3	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0015	9291	3	0	1	2	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0016	9291	3	0	0	3	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0017	9291	3	0	0	0	3	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0018	9291	3	1	2	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0019	9291	3	1	1	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0020	9291	3	0	0	3	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0021	9291	3	0	0	3	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0022	9291	2	0	0	0	0	2	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0023	9291	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0024	9291	2	0	1	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0025	9291	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0026	9291	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0027	9291	2	0	0	0	1	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0028	9291	2	1	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0029	9291	2	0	0	2	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0030	9291	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0031	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0032	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555