JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP54_chr12_96484577_96880555	0/0	c0033	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0034	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0035	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0036	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0037	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0038	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0039	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0040	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0041	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0042	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	1/0	c0043	9291	1	0	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0044	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0045	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0046	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0047	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0048	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0049	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0050	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0051	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0052	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0053	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0054	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0055	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0056	9291	1	0	0	0	1	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0057	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0058	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0059	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0060	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0061	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0062	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0063	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0064	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0065	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0066	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0067	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0068	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0069	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0070	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0071	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0072	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0073	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0074	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0075	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0076	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0077	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0078	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0079	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0080	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0081	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0082	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555