JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP54_chr12_96484577_96880555	0/0	c0083	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0084	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0085	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0086	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0087	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0088	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0089	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0090	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0091	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0092	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0093	9291	1	0	1	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0094	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0095	9291	1	0	0	1	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0096	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0097	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0098	9291	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0099	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	c0100	9291	1	1	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP57_chr1_43167330_43259358	0/0	c0001	3753	92	19	16	42	2	13	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0002	3753	39	0	1	34	0	4	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/1	c0003	3753	25	4	9	0	2	9	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0004	3753	21	0	12	8	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0005	3753	19	11	5	0	0	3	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0006	3753	12	10	2	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0007	3753	11	7	4	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0008	3753	7	6	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0009	3753	7	0	0	6	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0010	3753	6	6	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0011	3753	5	1	0	0	0	4	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0012	3753	5	5	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0013	3753	5	1	2	0	1	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0014	3753	3	2	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0015	3753	3	0	1	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0016	3753	3	0	0	3	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0017	3753	3	0	2	0	1	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0018	3753	3	3	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0019	3753	3	3	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0020	3753	2	0	2	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0021	3753	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0022	3753	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0023	3753	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0024	3753	2	0	2	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0025	3753	2	0	0	2	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	1/0	c0026	3753	2	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0027	3753	2	2	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0028	3753	2	1	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0029	3753	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0030	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0031	3753	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0032	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358