JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP57_chr1_43167330_43259358	0/0	c0033	3753	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0034	3753	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0035	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0036	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0037	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0038	3753	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0039	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0040	3753	1	0	1	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0041	3753	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0042	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0043	3753	1	0	0	0	0	1	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0044	3753	1	0	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0045	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	c0046	3753	1	1	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP58_chr10_104348833_104460102	1/1	c0001	2619	157	47	35	51	5	17	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0002	2619	80	16	10	41	3	10	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0003	2619	27	3	1	18	0	5	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0004	2619	11	8	0	1	1	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0005	2619	7	7	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0006	2619	4	0	0	4	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0007	2619	3	2	1	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0008	2619	2	0	0	2	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0009	2619	2	0	0	2	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0010	2619	2	0	2	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0011	2619	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0012	2619	1	0	1	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0013	2619	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0014	2619	1	0	0	1	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0015	2619	1	0	0	1	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0016	2619	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0017	2619	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0018	2619	1	0	0	0	1	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0019	2619	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0020	2619	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0021	2619	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0022	2619	1	0	0	1	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	c0023	2619	1	0	0	0	0	1	copy fasta	CFAP58	chr10	104348833	104460102
CFAP61_chr20_20047532_20365698	1/0	c0001	3714	73	20	16	28	0	8	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0002	3714	62	18	11	23	5	5	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0003	3714	18	7	6	0	1	4	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0004	3714	10	0	9	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0005	3714	7	0	1	0	3	3	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0006	3714	5	1	1	1	0	2	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/1	c0007	3714	5	0	3	0	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0008	3714	4	4	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0009	3714	4	4	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0010	3714	3	3	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0011	3714	3	2	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0012	3714	3	2	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0013	3714	2	2	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698