JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP61_chr20_20047532_20365698	0/0	c0014	3714	2	2	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0015	3714	2	0	1	0	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0016	3714	2	0	2	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0017	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0018	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0019	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0020	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0021	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0022	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0023	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0024	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0025	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0026	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0027	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0028	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0029	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0030	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0031	3714	1	0	0	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0032	3714	1	0	0	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0033	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0034	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0035	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0036	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0037	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0038	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0039	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0040	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0041	3714	1	0	1	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0042	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0043	3714	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0044	3714	1	0	0	0	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0045	3714	1	0	0	0	1	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0046	3714	1	0	0	0	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	c0047	3714	1	0	0	1	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP65_chr2_218997846_219046516	1/0	c0001	5778	95	3	29	48	1	13	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/1	c0002	5778	55	3	19	22	3	7	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0003	5778	43	8	3	27	1	4	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0004	5778	19	14	0	1	1	3	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0005	5778	11	0	0	11	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0006	5778	11	8	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0007	5778	10	8	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0008	5778	6	4	2	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0009	5778	5	5	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0010	5778	4	4	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0011	5778	4	4	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0012	5778	4	4	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0013	5778	4	0	0	4	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0014	5778	3	0	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0015	5778	3	0	0	3	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0016	5778	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516