JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP65_chr2_218997846_219046516	0/0	c0017	5778	2	2	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0018	5778	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0019	5778	2	2	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0020	5778	2	0	0	2	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0021	5778	2	2	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0022	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0023	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0024	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0025	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0026	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0027	5768	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0028	5778	1	0	1	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0029	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0030	5778	1	0	1	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0031	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0032	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0033	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0034	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0035	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0036	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0037	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0038	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0039	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0040	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0041	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0042	5778	1	0	0	0	0	1	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0043	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0044	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0045	5778	1	0	1	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0046	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0047	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0048	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0049	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0050	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0051	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0052	5778	1	0	0	1	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0053	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	c0054	5778	1	1	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP68_chr11_111874541_111890975	1/1	c0001	453	280	73	51	116	5	33	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	c0002	453	85	19	21	33	7	5	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	c0003	453	24	0	0	23	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	c0004	453	2	0	2	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	c0005	453	1	0	0	0	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP69_chr7_90240174_90316063	0/1	c0001	2826	118	21	22	51	5	18	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0002	2826	97	16	15	49	3	14	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0003	2826	35	2	3	27	0	3	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0004	2826	31	11	3	16	0	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	1/0	c0005	2826	17	3	9	0	3	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0006	2826	7	7	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0007	2826	6	5	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063