JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP69_chr7_90240174_90316063	0/0	c0008	2826	4	3	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0009	2826	4	0	2	0	1	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0010	2826	4	4	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0011	2826	3	3	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0012	2826	2	0	0	2	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0013	2826	2	2	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0014	2826	2	1	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0015	2826	2	2	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0016	2826	1	1	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0017	2826	1	0	0	1	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0018	2826	1	0	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP70_chr10_73248762_73363864	1/1	c0001	3366	126	40	9	63	0	12	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0002	3366	63	7	5	44	0	7	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0003	3366	13	12	1	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0004	3366	6	4	2	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0005	3366	2	1	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0006	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0007	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0008	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0009	3366	1	0	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0010	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0011	3366	1	0	0	1	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0012	3366	1	0	1	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0013	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0014	3366	1	0	0	0	0	1	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	c0015	3366	1	1	0	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP73_chr12_113144724_113164276	1/1	c0001	927	272	69	41	120	13	27	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0002	927	35	0	0	34	0	1	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0003	928	5	0	0	5	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0004	927	4	4	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0005	927	4	2	1	0	1	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0006	927	2	2	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0007	927	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0008	928	1	0	0	1	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0009	927	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	c0010	927	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP74_chr1_1916957_2008786	0/1	c0001	4920	37	1	11	13	4	7	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0002	4920	21	1	9	3	0	8	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0003	4923	18	2	4	6	5	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0004	4920	13	6	1	2	0	4	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0005	4920	11	11	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0006	4920	9	0	1	5	0	3	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	1/0	c0007	4920	8	0	2	3	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0008	4920	7	3	0	2	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0009	4920	6	0	4	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0010	4923	5	2	2	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0011	4920	5	1	2	1	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0012	4920	5	0	0	5	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0013	4923	5	2	0	2	0	1	copy fasta	CFAP74	chr1	1916957	2008786