JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP74_chr1_1916957_2008786	0/0	c0014	4920	5	5	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0015	4923	4	0	0	4	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0016	4920	4	0	0	4	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0017	4923	4	3	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0018	4923	4	0	0	4	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0019	4920	3	3	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0020	4920	3	0	0	3	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0021	4920	3	0	0	2	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0022	4920	3	1	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0023	4920	3	3	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0024	4920	3	2	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0025	4923	3	0	0	3	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0026	4923	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0027	4923	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0028	4920	2	0	0	1	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0029	4920	2	2	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0030	4923	2	0	0	1	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0031	4923	2	2	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0032	4920	2	0	0	0	0	2	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0033	4920	2	0	0	2	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0034	4920	2	1	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0035	4923	2	1	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0036	4920	2	0	0	1	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0037	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0038	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0039	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0040	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0041	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0042	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0043	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0044	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0045	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0046	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0047	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0048	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0049	4920	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0050	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0051	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0052	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0053	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0054	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0055	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0056	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0057	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0058	4923	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0059	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0060	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0061	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0062	4935	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0063	4923	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786