JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP74_chr1_1916957_2008786	0/0	c0064	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0065	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0066	4923	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0067	4923	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0068	4923	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0069	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0070	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0071	4923	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0072	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0073	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0074	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0075	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0076	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0077	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0078	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0079	4950	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0080	4920	1	0	0	0	1	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0081	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0082	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0083	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0084	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0085	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0086	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0087	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0088	4908	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0089	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0090	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0091	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0092	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0093	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0094	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0095	4920	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0096	4923	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0097	4923	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0098	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0099	4920	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	c0100	4920	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP77_chr9_132405211_132578319	0/1	c0001	855	156	49	31	54	8	13	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	1/0	c0002	855	67	10	22	15	7	12	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0003	855	52	4	9	36	0	3	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0004	855	15	15	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0005	855	5	3	0	2	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0006	855	4	1	2	0	1	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0007	855	3	0	0	2	0	1	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0008	855	3	0	0	0	0	3	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0009	855	3	3	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0010	855	3	0	0	3	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0011	855	3	0	0	3	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0012	855	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0013	855	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319