JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP77_chr9_132405211_132578319	0/0	c0014	855	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0015	855	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0016	855	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0017	855	1	0	0	1	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0018	855	1	0	0	1	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	c0019	855	1	0	0	1	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP90_chr5_7825378_7856133	1/0	c0001	444	291	36	54	155	13	32	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/1	c0002	444	68	21	11	24	3	8	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0003	444	16	1	0	15	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0004	444	15	14	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0005	444	12	11	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0006	444	6	6	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0007	444	4	3	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0008	444	3	3	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0009	444	2	0	0	2	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0010	444	2	0	2	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	c0011	444	1	1	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP91_chr3_119698022_119772102	0/1	c0001	2304	207	19	34	117	9	27	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0002	2304	71	3	16	43	3	6	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0003	2304	21	11	8	0	2	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	1/0	c0004	2304	21	19	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0005	2304	11	9	2	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0006	2304	7	0	0	7	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0007	2304	7	5	0	0	0	2	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0008	2304	6	6	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0009	2304	5	4	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0010	2304	5	5	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0011	2301	4	0	0	4	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0012	2304	3	3	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0013	2304	2	0	0	0	0	2	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0014	2304	2	0	0	0	0	2	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0015	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0016	2304	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0017	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0018	2304	1	0	0	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0019	2304	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0020	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0021	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0022	2304	1	0	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0023	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0024	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0025	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0026	2304	1	0	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0027	2304	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	c0028	2304	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP92_chr3_128904873_128999076	1/0	c0001	3315	210	23	44	107	11	24	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0002	3315	45	17	14	7	2	5	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0003	3315	24	13	8	0	2	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0004	3315	23	9	0	7	0	7	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0005	3315	7	6	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076