JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP92_chr3_128904873_128999076	0/0	c0006	3315	5	5	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0007	3315	2	1	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0008	3315	2	0	0	2	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0009	3315	2	2	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0010	3312	2	1	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0011	3315	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0012	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0013	3315	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0014	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/1	c0015	3315	1	0	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0016	3315	1	0	0	0	1	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0017	3315	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0018	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0019	3315	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0020	3315	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0021	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0022	3315	1	0	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0023	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0024	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0025	3315	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0026	2410	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0027	3315	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0028	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0029	3315	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	c0030	3312	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP95_chr9_69815817_69911227	1/1	c0001	690	283	75	47	118	10	31	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0002	690	75	6	15	37	6	11	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0003	690	5	0	0	5	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0004	690	3	3	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0005	690	2	2	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0006	690	2	0	2	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0007	690	2	2	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0008	690	2	0	0	2	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0009	690	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0010	690	1	0	1	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0011	690	1	0	1	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0012	690	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0013	690	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	c0014	690	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP97D1_chr17_43775435_43792620	1/1	c0001	495	384	76	82	166	10	48	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	c0002	495	16	14	2	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	c0003	495	1	0	0	1	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	c0004	495	1	0	0	1	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D2_chr13_114174257_114228085	1/1	c0001	297	396	92	77	175	10	40	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	c0002	297	2	1	1	0	0	0	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	c0003	297	1	0	0	1	0	0	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	c0004	297	1	1	0	0	0	0	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97_chr4_185154665_185209000	0/0	c0001	1599	163	34	30	68	11	20	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/1	c0002	1599	128	32	24	59	3	9	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0003	1599	16	0	0	11	0	5	copy fasta	CFAP97	chr4	185154665	185209000