JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP97_chr4_185154665_185209000	0/0	c0004	1599	15	14	1	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0005	1599	8	4	2	0	0	2	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0006	1599	4	3	1	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0007	1599	3	3	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0008	1599	2	0	1	0	0	1	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0009	1599	2	2	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0010	1599	2	2	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0011	1599	2	0	2	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	1/0	c0012	1599	1	0	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0013	1599	1	0	1	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0014	1599	1	0	0	0	0	1	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0015	1599	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	c0016	1599	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP99_chr4_2413955_2468002	0/0	c0001	1941	91	7	22	54	1	7	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0002	1941	71	24	8	26	4	9	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0003	1941	71	20	9	31	5	6	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/1	c0004	1941	23	11	4	0	4	3	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0005	1941	17	3	0	12	0	2	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0006	1941	15	12	3	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0007	1941	10	0	3	2	0	5	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0008	1941	8	0	6	2	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0009	1941	4	4	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0010	1941	3	1	0	1	0	1	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0011	1941	2	0	1	0	0	1	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0012	1941	2	2	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0013	1941	2	0	0	0	0	2	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0014	1941	2	0	0	2	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0015	1941	2	2	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0016	1941	2	0	0	0	0	2	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0017	1941	2	2	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0018	1941	2	2	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0019	1941	1	1	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0020	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0021	1941	1	1	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0022	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	1/0	c0023	1941	1	0	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0024	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0025	1941	1	0	0	0	0	1	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0026	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0027	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0028	1941	1	1	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0029	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0030	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0031	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0032	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0033	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0034	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0035	1941	1	1	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0036	1941	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0037	1941	1	0	0	0	0	1	copy fasta	CFAP99	chr4	2413955	2468002