JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFAP99_chr4_2413955_2468002	0/0	c0038	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	c0039	1941	1	0	0	1	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFB_chr6_31941095_31957084	0/1	c0001	2295	185	33	24	95	12	20	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0002	2295	73	2	16	52	0	3	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0003	2295	72	37	9	18	2	6	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0004	2295	21	12	7	0	2	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0005	2295	14	0	5	6	1	2	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0006	2295	14	2	0	7	0	5	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0007	2295	8	2	5	0	1	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0008	2295	7	0	5	1	0	1	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0009	2295	6	0	6	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0010	2295	5	1	0	0	0	4	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0011	2295	5	1	3	0	0	1	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0012	2295	4	0	0	4	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0013	2295	4	0	0	3	0	1	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0014	2295	3	0	0	3	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0015	2295	2	1	0	0	0	1	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0016	2295	2	2	0	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0017	2295	1	0	0	1	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0018	2295	1	0	0	1	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0019	2295	1	1	0	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0020	2295	1	0	0	1	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0021	2295	1	0	1	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	c0022	2295	1	0	1	0	0	0	copy fasta	CFB	chr6	31941095	31957084
CFC1B_chr2_130516222_130533603	0/0	c0001	672	4	2	2	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0002	672	2	2	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0003	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0004	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0005	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0006	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0007	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	c0008	672	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1_chr2_130587165_130604575	0/0	c0001	672	218	24	38	121	9	26	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0002	672	4	0	2	1	1	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0003	672	3	1	2	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0004	672	3	3	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0005	672	2	0	0	2	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0006	672	2	0	2	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0007	672	2	1	1	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0008	672	2	2	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0009	672	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0010	672	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0011	672	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0012	672	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0013	672	1	0	1	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	c0014	672	1	1	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFDP1_chr16_75288710_75438503	0/1	c0001	900	214	72	38	63	15	25	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	1/0	c0002	900	94	21	9	52	2	9	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	c0003	900	2	0	0	2	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	c0004	434	1	0	0	0	1	0	copy fasta	CFDP1	chr16	75288710	75438503