JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFDP1_chr16_75288710_75438503	0/0	c0005	900	1	0	1	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	c0006	900	1	0	0	1	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	c0007	900	1	1	0	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFD_chr19_854664_868641	0/1	c0001	762	258	51	50	109	10	37	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	c0002	762	17	0	1	15	0	1	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	c0003	762	8	7	1	0	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	c0004	762	2	2	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	c0005	762	1	1	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	c0006	762	1	1	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFHR1_chr1_196814731_196837189	1/0	c0001	993	122	4	24	77	4	12	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0002	993	105	8	23	70	4	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0003	993	30	2	3	21	2	2	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0004	993	5	5	0	0	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0005	993	4	0	0	4	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0006	993	3	3	0	0	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0007	993	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0008	993	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0009	993	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0010	993	1	0	0	1	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0011	993	1	1	0	0	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	c0012	993	1	1	0	0	0	0	copy fasta	CFHR1	chr1	196814731	196837189
CFHR2_chr1_196938738_196964622	1/1	c0001	813	229	77	38	69	12	31	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0002	813	119	1	26	80	5	7	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0003	813	7	7	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0004	809	6	0	0	6	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0005	813	2	0	0	2	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0006	813	2	0	2	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0007	813	1	1	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0008	813	1	0	1	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0009	813	1	0	0	1	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0010	813	1	0	0	0	1	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	c0011	813	1	0	1	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR3_chr1_196769840_196800407	0/0	c0001	993	118	12	10	89	2	5	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0002	993	89	0	24	59	6	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	1/0	c0003	993	37	3	15	10	2	6	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0004	993	5	0	0	5	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0005	993	4	0	0	4	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0006	993	2	2	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0007	993	2	2	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0008	993	1	0	0	0	0	1	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0009	993	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0010	993	1	0	0	1	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	c0011	993	1	1	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR4_chr1_196883052_196923633	0/0	c0001	1737	204	16	42	118	7	21	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/1	c0002	1737	119	54	15	30	4	15	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0003	1737	5	0	4	0	1	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	1/0	c0004	1737	4	3	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0005	1737	3	3	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0006	1737	2	1	1	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0007	1737	2	0	0	0	0	2	copy fasta	CFHR4	chr1	196883052	196923633