JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFHR4_chr1_196883052_196923633	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0009	1737	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0010	1737	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0011	1737	1	0	0	0	0	1	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0012	1737	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0013	1737	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0014	1737	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0015	1737	1	1	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0016	1737	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0017	1737	1	0	0	0	0	1	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	c0018	1737	1	0	0	1	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR5_chr1_196972556_197014678	1/1	c0001	1710	318	66	58	137	14	41	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0002	1710	7	5	0	2	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0003	1710	6	0	0	6	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0004	1710	5	5	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0005	1710	3	0	0	3	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0006	1710	3	2	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0007	1710	2	2	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0008	1710	2	2	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0009	1710	2	1	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0010	1710	2	1	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0011	1710	1	0	0	1	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0012	1710	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0013	1710	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0014	1710	1	0	0	1	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0015	1710	1	0	1	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	c0016	1710	1	0	0	0	0	1	copy fasta	CFHR5	chr1	196972556	197014678
CFH_chr1_196647043_196752504	0/0	c0001	3696	115	25	23	51	2	14	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0002	3696	64	2	10	46	2	4	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	1/0	c0003	3696	40	4	19	6	4	6	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/1	c0004	3696	26	7	9	2	2	5	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0005	3696	17	15	2	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0006	3696	6	4	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0007	3696	5	5	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0008	3696	4	3	0	0	0	1	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0009	3696	4	2	1	0	0	1	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0010	3696	3	3	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0011	3696	2	2	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0012	3696	2	2	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0013	3696	2	1	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0014	3696	2	0	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0015	3696	2	1	1	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0016	3696	2	0	0	2	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0017	3696	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0018	3696	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0019	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0020	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0021	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0022	3696	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0023	3696	1	0	0	0	0	1	copy fasta	CFH	chr1	196647043	196752504