JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFH_chr1_196647043_196752504	0/0	c0024	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0025	3696	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0026	3696	1	0	1	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0027	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	c0028	3696	1	0	0	1	0	0	copy fasta	CFH	chr1	196647043	196752504
CFI_chr4_109735695_109806999	0/1	c0001	1752	182	48	32	72	12	17	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0002	1752	124	25	31	62	2	4	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0003	1752	17	0	0	15	0	2	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	1/0	c0004	1752	15	13	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0005	1752	4	0	0	4	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0006	1752	2	2	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0007	1752	2	0	2	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0008	1752	2	2	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0009	1752	1	1	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0010	1752	1	0	0	0	0	1	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0011	1752	1	1	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0012	1752	1	0	0	1	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0013	1752	1	0	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	c0014	1752	1	0	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFL1_chr11_65849673_65863180	1/0	c0001	501	244	70	43	113	2	15	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	c0002	501	138	19	25	59	10	25	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	c0003	501	9	0	0	8	0	1	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	c0004	501	1	1	0	0	0	0	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/1	c0005	501	1	0	0	0	0	0	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	c0006	501	1	0	0	0	0	1	copy fasta	CFL1	chr11	65849673	65863180
CFL2_chr14_34704113_34719593	1/0	c0001	501	428	98	76	185	18	50	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	c0002	501	3	0	0	3	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFLAR_chr2_201111164_201181687	1/0	c0001	1443	124	42	30	32	1	18	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/1	c0002	1443	87	32	24	17	9	4	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0003	1443	7	7	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0004	1443	5	5	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0005	1443	5	0	0	5	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0006	1443	3	0	1	2	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0007	1443	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	c0008	1443	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFP_chrX_47618282_47634930	1/1	c0001	1410	239	48	44	115	9	21	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0002	1410	56	25	17	6	2	6	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0003	1410	2	0	2	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0004	1410	2	2	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0005	1410	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0006	1410	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0007	1410	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	c0008	1410	1	0	0	0	0	1	copy fasta	CFP	chrX	47618282	47634930
CFTR_chr7_117475025_117673665	0/0	c0001	4443	65	27	4	28	1	5	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	1/0	c0002	4443	52	3	9	28	3	8	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0003	4443	22	7	7	2	1	5	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/1	c0004	4443	22	13	6	0	2	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0005	4443	7	6	0	0	0	1	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0006	4443	7	6	0	0	0	1	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0007	4443	4	0	0	4	0	0	copy fasta	CFTR	chr7	117475025	117673665