JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CFTR_chr7_117475025_117673665	0/0	c0008	4443	2	0	2	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0009	4443	2	2	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0010	4443	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0011	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0012	4443	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0013	4443	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0014	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0015	4443	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0016	4443	1	0	0	0	1	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0017	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0018	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0019	4443	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0020	4443	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0021	4443	1	0	0	0	1	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0022	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0023	4443	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0024	4443	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0025	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0026	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0027	4443	1	0	0	0	1	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	c0028	4443	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CGAS_chr6_73418711_73457297	0/0	c0001	1569	126	27	18	51	13	17	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0002	1569	95	23	27	41	1	3	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0003	1569	82	18	9	44	2	9	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0004	1569	27	5	5	14	2	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0005	1569	22	4	3	13	0	2	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0006	1569	18	3	4	11	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	1/0	c0007	1569	14	7	2	1	0	3	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0008	1569	6	2	0	4	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0009	1569	4	0	0	4	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0010	1569	3	3	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/1	c0011	1569	2	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0012	1569	2	0	2	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0013	1569	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0014	1569	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0015	1569	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0016	1569	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0017	1569	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0018	1569	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0019	1569	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0020	1569	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	c0021	1569	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGA_chr6_87080498_87100106	1/1	c0001	351	407	80	70	198	18	39	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	c0002	351	13	12	0	0	0	1	copy fasta	CGA	chr6	87080498	87100106
CGB1_chr19_49030569_49041895	1/1	c0001	468	260	49	40	129	9	31	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0002	468	78	13	35	14	3	13	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0003	468	9	9	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0004	468	5	5	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0005	468	4	4	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0006	468	4	3	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895