JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CGB1_chr19_49030569_49041895	0/0	c0007	468	3	3	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0008	468	2	0	0	2	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0009	468	2	0	2	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0010	468	2	0	2	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0011	468	1	1	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0012	468	1	0	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0013	468	1	0	0	1	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0014	468	1	1	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0015	468	1	0	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0016	468	1	0	0	0	0	1	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	c0017	468	1	0	0	0	0	1	copy fasta	CGB1	chr19	49030569	49041895
CGB2_chr19_49026890_49038238	0/0	c0001	492	220	30	41	112	8	29	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0002	492	86	16	34	18	3	15	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0003	492	14	13	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0004	492	10	8	1	0	1	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0005	492	6	0	0	6	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0006	492	5	5	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0007	492	3	3	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0008	493	3	0	0	2	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0009	492	3	2	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0010	492	2	1	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0011	492	2	2	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0012	492	2	2	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0013	492	1	0	0	0	1	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0014	457	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0015	493	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0016	494	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0017	494	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0018	493	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0019	492	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0020	492	1	0	0	0	1	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0021	492	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0022	491	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0023	493	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0024	492	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0025	492	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0026	492	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0027	492	1	0	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0028	492	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	c0029	492	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB3_chr19_49017869_49029333	1/0	c0001	498	201	45	32	93	4	26	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0002	498	176	45	46	53	10	22	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0003	498	6	4	2	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0004	498	4	0	0	4	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0005	498	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0006	498	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0007	498	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	c0008	498	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB5_chr19_49038848_49050311	1/1	c0001	498	259	52	39	130	10	26	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0002	498	72	16	20	18	3	15	copy fasta	CGB5	chr19	49038848	49050311