JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CGB5_chr19_49038848_49050311	0/0	c0003	498	19	17	2	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0004	498	11	1	7	0	1	2	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0005	498	8	0	0	8	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0006	498	4	2	2	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0007	498	3	3	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0008	498	2	1	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0009	498	1	0	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0010	498	1	0	0	0	0	1	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0011	498	1	1	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	c0012	498	1	1	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB7_chr19_49049274_49062749	1/0	c0001	498	260	58	49	121	5	26	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/1	c0002	498	93	17	17	34	5	19	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0003	498	30	0	4	25	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0004	498	12	10	2	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0005	498	4	0	0	4	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0006	498	3	3	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0007	498	3	0	2	0	1	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0008	498	2	2	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0009	498	2	0	0	2	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0010	498	1	0	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0011	498	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0012	498	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0013	498	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0014	498	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0015	744	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0016	498	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0017	498	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0018	498	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0019	498	1	0	0	0	1	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0020	498	1	0	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0021	498	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	c0022	498	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB8_chr19_49042638_49054111	1/1	c0001	498	370	78	73	162	14	41	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0002	498	13	12	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0003	498	3	2	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0004	498	1	0	0	0	0	1	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0005	498	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0006	498	1	1	0	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0007	498	1	0	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0008	498	1	0	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0009	498	1	0	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0010	498	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	c0011	498	1	1	0	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGGBP1_chr3_88046950_88064005	1/1	c0001	504	354	85	75	148	10	34	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	c0002	504	3	3	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	c0003	504	1	0	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGNL1_chr15_57371505_57555717	0/0	c0001	3909	103	25	24	32	5	17	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0002	3909	50	24	10	12	0	4	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0003	3909	24	2	5	11	4	2	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0004	3909	19	1	6	7	2	3	copy fasta	CGNL1	chr15	57371505	57555717