JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CGNL1_chr15_57371505_57555717	0/0	c0005	3909	14	1	3	10	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0006	3909	11	6	2	1	1	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0007	3909	9	8	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0008	3909	8	0	6	2	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/1	c0009	3909	7	1	0	1	2	2	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0010	3909	5	5	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0011	3909	4	0	0	4	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	1/0	c0012	3909	3	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0013	3909	3	3	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0014	3909	3	2	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0015	3909	2	0	2	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0016	3909	2	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0017	3909	2	1	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0018	3909	2	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0019	3909	2	1	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0020	3909	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0021	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0022	3909	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0023	3909	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0024	3909	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0025	3909	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0026	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0027	3909	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0028	3909	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0029	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0030	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0031	3909	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0032	3909	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0033	3909	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0034	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0035	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0036	3909	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0037	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0038	3909	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0039	3909	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	c0040	3909	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGN_chr1_151506387_151543692	1/0	c0001	3612	252	48	48	118	10	27	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0002	3612	39	0	8	25	0	6	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0003	3612	18	18	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0004	3612	13	1	5	7	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0005	3612	5	0	1	1	0	3	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0006	3612	5	0	1	3	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0007	3612	4	4	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0008	3612	4	4	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0009	3612	4	4	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0010	3612	3	0	0	3	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0011	3612	3	0	3	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0012	3612	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0013	3612	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0014	3612	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692