Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADA2_chr22_17173790_17224435	0/0	c0015	1536	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0016	1471	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0017	1536	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0018	1536	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	c0019	1536	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADAD1_chr4_122374011_122434784	1/1	c0001	1731	335	60	61	165	18	29	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0002	1731	33	31	2	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0003	1731	2	0	0	2	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0004	1731	2	2	0	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0005	1731	1	0	1	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0006	1731	1	1	0	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0007	1731	1	0	0	0	0	1	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	c0008	1731	1	0	0	1	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD2_chr16_84186157_84202166	0/0	c0001	1752	109	39	14	46	3	7	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/1	c0002	1752	97	8	29	40	5	14	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	1/0	c0003	1752	88	3	21	48	3	12	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0004	1752	44	13	0	31	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0005	1752	32	1	6	15	2	8	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0006	1752	15	0	6	9	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0007	1752	14	2	0	8	0	4	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0008	1752	10	10	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0009	1752	6	1	1	0	4	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0010	1752	5	3	1	0	1	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0011	1752	5	4	1	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0012	1752	5	2	0	3	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0013	1752	4	0	0	4	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0014	1752	2	1	1	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0015	1752	2	1	0	0	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0016	1752	2	2	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0017	1752	2	2	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0018	1752	2	0	0	1	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0019	1752	2	0	1	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0020	1752	2	0	0	2	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0021	1752	2	2	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0022	1752	2	0	2	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0023	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0024	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0025	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0026	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0027	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0028	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0029	1720	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0030	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0031	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0032	1752	1	0	0	0	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0033	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0034	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0035	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0036	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0037	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166