JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CGN_chr1_151506387_151543692	0/0	c0015	3612	2	0	1	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0016	3612	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0017	3612	1	0	0	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0018	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0019	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0020	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0021	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0022	3612	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0023	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0024	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/1	c0025	3612	1	0	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0026	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0027	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0028	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0029	3612	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0030	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0031	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0032	3612	1	0	0	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0033	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0034	3612	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0035	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0036	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0037	3612	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	c0038	3612	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGREF1_chr2_27095594_27124128	0/1	c0001	906	167	22	36	73	11	24	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0002	906	146	50	39	40	7	10	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	1/0	c0003	957	12	10	1	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0004	906	12	7	1	4	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0005	906	6	0	0	6	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0006	906	2	0	1	0	0	1	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0007	957	2	2	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0008	906	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0009	906	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0010	906	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0011	906	1	1	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	c0012	906	1	0	0	0	0	1	copy fasta	CGREF1	chr2	27095594	27124128
CGRRF1_chr14_54504906_54544292	1/1	c0001	999	287	70	51	130	3	31	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	c0002	999	42	8	6	27	0	1	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	c0003	999	5	2	2	0	1	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	c0004	999	2	0	2	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	c0005	999	1	0	1	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	c0006	999	1	0	0	1	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CH25H_chr10_89200629_89212317	1/1	c0001	819	222	93	50	47	10	20	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	c0002	819	132	1	16	96	1	18	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	c0003	819	27	0	7	10	5	5	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	c0004	819	1	0	0	1	0	0	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	c0005	819	1	0	0	0	0	1	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	c0006	819	1	0	1	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CHAC1_chr15_40948471_40961512	1/1	c0001	669	407	92	71	186	15	41	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	c0002	669	3	0	0	3	0	0	copy fasta	CHAC1	chr15	40948471	40961512