JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHAF1A_chr19_4397640_4448397	0/0	c0013	2871	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0014	2871	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0015	2871	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0016	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0017	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0018	2871	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0019	2871	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0020	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0021	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0022	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0023	2871	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0024	2891	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0025	2871	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	c0026	2871	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1B_chr21_36380392_36424015	1/1	c0001	1680	318	79	63	121	8	45	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0002	1680	8	6	2	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0003	1680	7	0	4	0	2	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0004	1680	4	1	3	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0005	1680	4	3	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0006	1680	3	2	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	c0008	1680	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAMP1_chr13_114309503_114332322	1/1	c0001	2439	300	56	51	152	10	29	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0002	2439	45	11	5	24	0	5	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0003	2439	20	10	4	0	0	6	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0004	2439	13	0	4	8	0	1	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0005	2439	9	0	0	9	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0006	2439	3	0	0	3	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0007	2439	3	3	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0008	2439	3	3	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0009	2439	3	0	1	0	2	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0010	2439	2	0	0	2	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0011	2439	2	1	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0012	2439	2	0	0	2	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0013	2439	2	0	0	2	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0014	2439	2	0	2	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0015	2439	1	0	0	0	0	1	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0016	2439	1	0	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0017	2439	1	0	0	1	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0018	2439	1	0	0	1	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	c0019	2439	1	0	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAT_chr10_49609037_49672942	0/1	c0001	2247	172	50	40	45	10	26	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0002	2247	50	0	15	21	4	10	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0003	2247	43	7	13	15	3	5	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0004	2247	31	0	3	28	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0005	2247	20	0	0	20	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0006	2247	17	0	0	17	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0007	2247	14	1	1	12	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0008	2247	13	0	1	12	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	1/0	c0009	2247	9	8	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942