JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHAT_chr10_49609037_49672942	0/0	c0010	2247	9	8	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0011	2247	4	4	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0012	2247	3	0	0	3	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0013	2247	3	3	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0014	2247	2	2	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0015	2247	2	0	0	2	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0016	2247	2	0	0	2	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0017	2247	2	2	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0018	2247	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0019	2247	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0020	2247	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0021	2247	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0022	2247	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0023	2247	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0024	2247	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0025	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0026	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0027	2247	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0028	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0029	2247	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0030	2247	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0031	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0032	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0033	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0034	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0035	2247	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0036	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0037	2247	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0038	2247	1	0	0	0	1	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	c0039	2247	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHCHD10_chr22_23760834_23772972	0/1	c0001	429	269	52	69	113	12	22	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0002	429	69	19	2	29	3	16	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0003	429	49	0	6	36	1	6	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0004	429	20	19	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0005	429	16	2	2	8	0	4	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0006	429	2	2	0	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0007	429	2	2	0	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0008	429	2	2	0	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0009	429	1	0	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	c0010	429	1	0	1	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD1_chr10_73777048_73788652	0/0	c0001	357	339	82	57	151	12	37	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	c0002	357	1	0	0	1	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	c0003	357	1	0	0	0	0	1	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	c0004	357	1	0	1	0	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD2_chr7_56096573_56111476	1/1	c0001	456	437	96	73	204	18	44	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	c0002	456	4	0	0	4	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	c0003	456	1	0	1	0	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD3_chr7_132779870_133087090	1/1	c0001	684	307	75	63	115	16	36	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	c0002	684	1	1	0	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	c0003	684	1	0	0	1	0	0	copy fasta	CHCHD3	chr7	132779870	133087090