JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHD1L_chr1_147237684_147300762	0/0	c0024	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0025	2694	1	1	0	0	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0026	2694	1	0	0	0	0	1	copy fasta	CHD1L	chr1	147237684	147300762
CHD1L_chr1_147237684_147300762	0/0	c0027	2694	1	0	0	1	0	0	copy fasta	CHD1L	chr1	147237684	147300762
CHD1_chr5_98848985_98934007	1/1	c0001	5133	215	24	40	117	6	26	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0002	5130	71	28	18	20	2	3	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0003	5133	35	29	2	0	1	3	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0004	5133	6	6	0	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0005	5133	2	1	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0006	5133	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0007	5133	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0008	5133	1	0	0	1	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0009	5130	1	0	0	0	1	0	copy fasta	CHD1	chr5	98848985	98934007
CHD1_chr5_98848985_98934007	0/0	c0010	5133	1	0	1	0	0	0	copy fasta	CHD1	chr5	98848985	98934007
CHD2_chr15_92895324_93032996	0/0	c0001	5487	163	16	45	72	7	23	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0002	5487	47	14	7	24	1	1	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	1/0	c0003	5487	38	23	9	0	0	5	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0004	5487	18	2	5	7	1	3	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0005	5487	12	1	3	0	6	2	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0006	5487	5	3	0	0	0	2	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0007	5487	4	3	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/1	c0008	5487	3	1	0	0	1	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0009	5487	3	2	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0010	5487	2	2	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0011	5487	2	0	2	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0012	5487	2	2	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0013	5487	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0014	5487	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0015	5487	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0016	5487	1	0	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0017	5487	1	0	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0018	5487	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	c0019	5487	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD3_chr17_7883789_7917755	1/1	c0001	6003	278	53	60	117	14	32	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0002	6003	35	18	3	13	1	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0003	6003	16	1	10	3	1	1	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0004	6003	10	0	0	5	0	5	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0005	6003	7	7	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0006	6003	3	0	0	3	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0007	6003	3	0	0	3	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0008	6003	2	0	1	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0009	6003	2	2	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0010	6003	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0011	6003	1	0	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0012	6003	1	0	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0013	6003	1	0	1	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0014	6003	1	0	1	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0015	6003	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0016	6003	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0017	6003	1	0	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755