JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHD3_chr17_7883789_7917755	0/0	c0018	6003	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	c0019	6003	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD4_chr12_6565082_6612379	1/0	c0001	5739	136	9	28	76	6	16	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/1	c0002	5739	114	65	17	21	2	8	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0003	5739	65	0	10	49	0	6	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0004	5739	22	8	3	2	3	6	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0005	5739	15	0	10	4	1	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0006	5739	7	7	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0007	5739	4	0	0	3	0	1	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0008	5739	2	0	0	2	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0009	5739	1	0	1	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0010	5739	1	0	0	0	0	1	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0011	5739	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0012	5739	1	0	0	1	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0013	5739	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0014	5739	1	0	1	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0015	5739	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0016	5739	1	0	0	1	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	c0017	5739	1	0	0	1	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD5_chr1_6096787_6185321	0/0	c0001	5865	52	8	2	33	1	8	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	1/1	c0002	5865	38	11	17	0	3	5	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0003	5865	37	0	4	29	2	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0004	5865	30	4	2	17	1	6	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0005	5865	19	4	5	9	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0006	5865	14	12	2	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0007	5865	12	0	7	3	0	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0008	5865	12	6	0	5	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0009	5865	10	7	1	1	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0010	5865	10	4	3	0	0	3	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0011	5865	10	0	0	9	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0012	5865	6	6	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0013	5865	6	5	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0014	5865	5	5	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0015	5865	5	0	0	5	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0016	5865	4	0	2	0	1	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0017	5865	4	4	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0018	5865	4	0	0	4	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0019	5865	3	3	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0020	5865	3	0	1	2	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0021	5865	2	2	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0022	5865	2	0	2	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0023	5865	2	0	0	0	0	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0024	5865	2	0	2	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0025	5865	2	1	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0026	5865	2	2	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0027	5865	2	0	0	0	1	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0028	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0029	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0030	5865	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0031	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321