JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHD5_chr1_6096787_6185321	0/0	c0032	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0033	5865	1	0	0	0	1	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0034	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0035	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0036	5865	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0037	5865	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0038	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0039	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0040	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0041	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0042	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0043	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0044	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0045	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0046	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0047	5865	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0048	5865	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	c0049	5865	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD6_chr20_41397083_41623377	1/1	c0001	8148	205	50	33	85	11	24	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0002	8148	61	7	9	42	1	2	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0003	8148	10	9	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0004	8148	6	0	0	6	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0005	8148	5	3	0	2	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0006	8148	5	1	3	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0007	8148	4	3	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0008	8148	3	1	2	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0009	8148	3	0	2	0	0	1	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0010	8148	2	1	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0011	8148	2	0	0	2	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0012	8148	2	0	2	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0013	8148	2	0	0	0	0	2	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0014	8148	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0015	8104	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0016	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0017	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0018	8148	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0019	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0020	8148	1	0	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0021	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0022	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0023	8148	1	0	1	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0024	8148	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0025	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0026	8148	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	c0027	8148	1	0	0	0	0	1	copy fasta	CHD6	chr20	41397083	41623377
CHD7_chr8_60673740_60873028	1/1	c0001	8994	159	24	35	74	9	15	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0002	8994	27	16	3	5	1	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0003	8994	6	6	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0004	8994	3	0	1	2	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0005	8994	3	1	0	0	1	1	copy fasta	CHD7	chr8	60673740	60873028