JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHD7_chr8_60673740_60873028	0/0	c0006	8994	2	1	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0007	8994	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0008	8994	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0009	8994	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0010	8994	2	0	1	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0011	8994	1	0	0	0	1	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0012	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0013	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0014	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0015	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0016	8994	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0017	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0018	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0019	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0020	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0021	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0022	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0023	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0024	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0025	8994	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0026	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0027	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0028	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0029	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0030	8994	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0031	8994	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0032	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0033	8994	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0034	8994	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0035	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0036	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0037	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	c0038	8994	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD8_chr14_21380199_21461123	0/1	c0001	7746	123	54	23	27	4	14	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0002	7746	71	20	12	32	4	3	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	1/0	c0003	7746	42	3	14	15	2	7	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0004	7746	4	0	0	4	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0005	7746	3	3	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0006	7746	3	3	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0007	7746	2	2	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0008	7746	2	2	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0009	7746	2	2	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0010	7746	1	0	0	0	0	1	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0011	7746	1	0	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0012	7746	1	0	0	0	0	1	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0013	7746	1	0	0	1	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0014	7746	1	0	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0015	7746	1	0	0	1	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0016	7746	1	0	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	c0017	7746	1	1	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123