JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHD9NB_chr16_53036484_53057897	1/1	c0001	159	325	89	49	139	9	37	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	c0002	159	81	5	21	39	7	9	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9_chr16_53049991_53332497	0/1	c0001	8694	81	41	5	23	4	7	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0002	8694	48	8	8	19	4	9	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0003	8694	37	3	5	23	1	5	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	1/0	c0004	8694	34	5	4	19	1	4	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0005	8694	22	16	1	3	0	2	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0006	8694	3	0	0	3	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0007	8694	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0008	8694	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0009	8694	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0010	8694	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0011	8694	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0012	8694	1	0	0	0	0	1	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0013	8694	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0014	8694	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0015	8694	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0016	8694	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0017	8694	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0018	8694	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	c0019	8694	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHDH_chr3_53807335_53851419	0/1	c0001	1785	151	19	35	72	9	15	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0002	1785	125	26	16	76	2	5	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0003	1785	47	28	4	8	0	7	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	1/0	c0004	1785	24	13	5	0	2	3	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0005	1785	11	0	6	0	3	2	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0006	1785	6	0	3	0	1	2	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0007	1785	6	6	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0008	1785	6	0	6	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0009	1785	2	2	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0010	1785	2	0	0	0	1	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0011	1785	2	2	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0012	1785	2	0	0	2	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0013	1785	2	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0014	1785	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0015	1785	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0016	1785	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0017	1785	1	0	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0018	1785	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	c0019	1785	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHEK1_chr11_125620163_125662147	0/1	c0001	1431	378	88	61	176	16	36	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	1/0	c0002	1431	4	0	3	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	c0003	1431	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	c0004	1431	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK2_chr22_28682743_28746820	1/1	c0001	1632	360	80	67	155	15	41	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0002	1632	14	5	0	8	0	1	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0003	1632	2	0	0	2	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0004	1632	1	0	0	1	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0005	1632	1	0	0	0	1	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820