Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAD2_chr16_84186157_84202166	0/0	c0038	1752	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0039	1752	1	0	1	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	c0040	1752	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAL_chr15_43325672_43359569	0/0	c0001	1068	196	68	19	85	4	20	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	1/1	c0002	1068	171	9	45	85	8	22	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0003	1068	8	0	0	8	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0004	1068	4	4	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0005	1068	2	2	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0006	1068	2	0	0	0	2	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0007	1068	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0008	1068	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAM10_chr15_58583809_58754707	1/1	c0001	2247	332	81	46	153	12	38	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	c0002	2247	6	0	0	6	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	c0003	2247	2	0	0	2	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	c0004	2247	1	1	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	c0005	2247	1	0	0	1	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM11_chr17_44753988_44786846	0/1	c0001	2310	192	38	49	73	11	20	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0002	2310	85	45	18	15	2	5	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	1/0	c0003	2310	48	8	4	27	1	7	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0004	2310	2	1	1	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0005	2310	1	0	1	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0006	2310	1	0	1	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0007	2310	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0008	2310	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0009	2310	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0010	2310	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0011	2310	1	0	0	1	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0012	2310	1	1	0	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM11_chr17_44753988_44786846	0/0	c0013	2310	1	1	0	0	0	0	copy fasta	ADAM11	chr17	44753988	44786846
ADAM12_chr10_126007391_126393477	1/0	c0001	2721	44	11	6	18	4	4	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0002	2721	43	20	10	9	0	4	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/1	c0003	2721	25	3	2	15	2	2	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0004	2721	18	6	7	3	1	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0005	2721	16	0	0	13	1	2	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0006	2721	14	5	2	5	0	2	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0007	2721	7	0	1	4	1	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0008	2721	6	1	1	0	2	2	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0009	2721	4	0	0	2	0	2	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0010	2721	4	1	0	2	0	1	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0011	2721	4	0	0	3	1	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0012	2721	3	3	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0013	2721	3	0	0	3	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0014	2721	3	0	1	2	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0015	2721	3	3	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0016	2721	3	0	0	3	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0017	2721	3	0	2	1	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0018	2721	2	1	1	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0019	2721	2	2	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477
ADAM12_chr10_126007391_126393477	0/0	c0020	2721	2	2	0	0	0	0	copy fasta	ADAM12	chr10	126007391	126393477