JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHEK2_chr22_28682743_28746820	0/0	c0007	1632	1	0	0	1	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0008	1632	1	0	0	1	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0009	1632	1	0	1	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0010	1632	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	c0011	1632	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHERP_chr19_16512894_16547437	0/1	c0001	2751	262	79	59	73	8	42	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	1/0	c0002	2751	48	0	9	34	1	3	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	c0003	2751	16	10	4	0	1	1	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	c0004	2751	2	0	0	2	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	c0005	2751	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	c0006	2751	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHFR_chr12_132827356_132892605	0/0	c0001	1959	152	33	26	84	3	6	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0002	1959	85	17	21	32	5	10	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/1	c0003	1959	53	17	13	7	6	9	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0004	1959	51	2	11	26	4	8	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	1/0	c0005	1959	15	14	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0006	1959	9	0	0	9	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0007	1959	2	0	0	0	0	2	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0008	1959	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0009	1959	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0010	1959	1	0	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0011	1959	1	0	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0012	1959	1	1	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0013	1959	1	0	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0014	1959	1	0	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0015	1959	1	0	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	c0016	1959	1	0	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHGA_chr14_92918150_92940285	0/1	c0001	1374	159	45	25	65	9	14	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0002	1374	84	8	12	47	4	13	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0003	1374	47	8	16	13	3	7	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0004	1374	47	0	15	29	2	1	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0005	1374	42	1	3	36	0	2	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0006	1374	17	0	0	10	0	7	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0007	1374	15	12	3	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0008	1374	4	0	0	0	0	4	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0009	1374	4	4	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0010	1374	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0011	1374	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0012	1377	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0013	1371	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0014	1374	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0015	1374	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0016	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0017	1374	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0018	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0019	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0020	1377	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0021	1377	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0022	1374	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0023	1374	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285