JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHGA_chr14_92918150_92940285	0/0	c0024	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0025	1374	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0026	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0027	1374	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0028	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0029	1374	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0030	1371	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0031	1371	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0032	1364	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	c0033	1374	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGB_chr20_5906510_5930353	0/0	c0001	2034	103	7	14	68	5	9	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/1	c0002	2034	87	17	21	28	6	14	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0003	2034	66	4	0	59	0	3	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0004	2034	58	13	17	17	0	11	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	1/0	c0005	2034	42	13	17	1	5	5	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0006	2034	22	0	0	20	1	1	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0007	2034	20	19	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0008	2034	9	4	1	4	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0009	2034	7	7	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0010	2034	4	0	4	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0011	2034	4	4	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0012	2034	3	3	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0013	2034	2	0	0	2	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0014	2034	2	0	0	2	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0015	2034	2	1	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0016	2034	1	0	0	0	1	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0017	2034	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0018	2034	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0019	2034	1	0	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0020	2034	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0021	2034	1	1	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0022	2034	1	0	1	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0023	2034	1	0	0	0	0	1	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	c0024	2034	1	0	0	1	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHI3L1_chr1_203173931_203191704	0/0	c0001	1152	305	75	59	143	8	20	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/1	c0002	1152	147	21	20	70	8	27	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0003	1152	4	0	0	4	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0004	1152	2	0	2	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0005	1152	2	0	2	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0006	1152	1	0	0	1	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0007	1152	1	1	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0008	1152	1	1	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	1/0	c0009	1152	1	0	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0010	1152	1	0	0	1	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0011	1152	1	0	0	0	0	1	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0012	1152	1	0	1	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	c0013	1152	1	0	0	1	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L2_chr1_111222713_111248440	1/0	c0001	1173	239	52	38	131	3	14	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/1	c0002	1173	61	7	6	31	4	12	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0003	1173	55	1	19	29	4	2	copy fasta	CHI3L2	chr1	111222713	111248440