JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHI3L2_chr1_111222713_111248440	0/0	c0004	1173	35	24	3	8	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0005	1173	26	3	4	2	3	14	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0006	1173	4	4	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0007	1173	2	0	2	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0008	1173	2	0	0	2	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0009	1173	2	2	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0010	1173	2	0	0	2	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0011	1173	2	0	2	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0013	1173	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0014	1211	1	1	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	c0015	1173	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHIA_chr1_111285851_111325563	1/0	c0001	1431	164	17	41	91	6	8	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0002	1431	123	7	14	75	5	22	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0003	1431	42	18	7	9	1	7	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0004	1431	22	8	9	0	0	5	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0005	1431	14	9	0	3	1	1	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0006	1431	11	4	3	2	2	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0007	1431	10	9	1	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0008	1431	8	8	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0009	1431	7	0	0	7	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0010	1431	4	0	0	4	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0011	1445	4	4	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0012	1431	3	3	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0013	1431	2	0	0	1	0	1	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0014	1431	2	1	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0015	1431	2	2	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/1	c0016	1431	2	0	0	0	1	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0017	1431	1	0	1	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0018	1431	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0019	1431	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0020	1431	1	0	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0021	1445	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	c0022	1431	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIC1_chrX_73558197_73692111	1/1	c0001	675	208	64	43	68	9	22	copy fasta	CHIC1	chrX	73558197	73692111
CHIC2_chr4_54004789_54069605	1/1	c0001	498	240	80	42	70	16	30	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	c0002	498	4	4	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHID1_chr11_862859_915810	0/0	c0001	1182	212	42	24	109	7	30	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	1/0	c0002	1182	157	40	42	57	7	10	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/1	c0003	1182	10	0	7	0	2	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0004	1182	2	2	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0006	1182	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0007	1182	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0008	1182	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHIT1_chr1_203211079_203234673	0/0	c0001	1425	159	3	31	103	2	20	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	1/0	c0002	1401	120	45	26	28	6	14	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0003	1401	113	21	13	65	6	8	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/1	c0004	1401	21	0	15	0	3	2	copy fasta	CHIT1	chr1	203211079	203234673