JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHIT1_chr1_203211079_203234673	0/0	c0005	1401	12	2	0	9	0	1	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0006	1401	9	0	0	8	0	1	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0007	1399	9	9	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0008	1401	9	9	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0009	1425	6	0	0	4	0	2	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0010	1401	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0011	1401	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0012	1401	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0013	1401	2	2	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0014	1401	2	0	0	2	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0015	1425	2	0	0	2	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0016	1401	1	0	1	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0017	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0018	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0019	1401	1	1	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0020	1401	1	1	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0021	1401	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0022	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0023	1399	1	1	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0024	1425	1	0	0	0	1	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0025	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0026	1401	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0027	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0028	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	c0029	1425	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHKA_chr11_68047859_68126388	1/1	c0001	1374	275	86	48	97	14	28	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	c0002	1374	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKB_chr22_50573963_50587849	1/1	c0001	1188	404	94	67	182	14	45	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0002	1188	6	6	0	0	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0003	1188	2	0	0	0	2	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0004	1188	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0005	1188	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0006	1188	1	0	0	0	0	1	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	c0007	1188	1	0	1	0	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHL1_chr3_191763_414417	0/1	c0001	3675	153	17	34	71	8	22	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0002	3675	56	15	9	24	1	7	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0003	3675	23	22	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0004	3675	13	13	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0005	3675	5	0	4	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	1/0	c0006	3675	5	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0007	3675	4	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0008	3675	4	2	2	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0009	3675	3	3	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0010	3675	3	1	0	1	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0011	3675	2	1	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0012	3675	2	0	1	0	1	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0013	3675	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0014	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0015	3675	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0016	3675	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417