JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHL1_chr3_191763_414417	0/0	c0017	3675	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0018	3675	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0019	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0020	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0021	3675	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0022	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0023	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0024	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0025	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0026	3675	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0027	3675	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0028	3675	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	c0029	3675	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHML_chr1_241623851_241645369	1/1	c0001	1971	311	64	41	165	11	28	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0002	1971	114	22	26	45	5	16	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0003	1971	6	6	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0004	1971	5	1	2	0	0	2	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0005	1971	2	2	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0006	1971	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0007	1971	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0008	1971	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0009	1971	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0010	1941	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0011	1971	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0012	1971	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0013	1971	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0014	1971	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0015	1971	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0016	1971	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	c0017	1971	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHMP1A_chr16_89639435_89662708	1/1	c0001	591	387	92	76	158	12	47	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	c0002	591	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	c0003	591	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	c0004	591	1	0	0	0	0	1	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	c0005	591	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1B_chr18_11846413_11859444	1/1	c0001	600	436	100	75	197	16	46	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	c0002	600	1	0	0	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	c0003	600	1	0	1	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP2A_chr19_58546566_58560105	1/1	c0001	669	418	96	70	195	18	37	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	c0002	669	1	0	0	1	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	c0003	669	1	0	0	0	0	1	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2B_chr3_87222309_87260556	0/1	c0001	642	285	35	57	141	12	39	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	1/0	c0002	642	68	41	9	14	0	3	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	c0003	642	51	6	3	38	2	2	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	c0004	642	7	6	1	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	c0005	642	2	0	2	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	c0006	642	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP3_chr2_86498430_86568443	1/1	c0001	669	294	53	64	130	14	31	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	c0002	669	42	35	6	0	0	1	copy fasta	CHMP3	chr2	86498430	86568443
CHMP4A_chr14_24204615_24218488	1/1	c0001	669	295	75	30	151	10	27	copy fasta	CHMP4A	chr14	24204615	24218488