JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHMP4A_chr14_24204615_24218488	0/0	c0002	669	115	16	42	39	6	12	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0003	669	3	3	0	0	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0004	669	1	0	0	0	0	1	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0005	682	1	0	0	1	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0006	669	1	0	0	0	0	1	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0007	669	1	0	0	0	0	1	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	c0008	669	1	0	0	1	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4B_chr20_33806348_33859366	1/1	c0001	675	331	90	65	126	10	38	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	c0002	675	1	0	1	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4C_chr8_81727448_81764515	1/0	c0001	702	385	91	62	181	13	37	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/1	c0002	702	14	1	5	0	1	6	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	c0003	702	6	2	3	0	0	1	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	c0004	702	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	c0005	702	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	c0006	702	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP5_chr9_33260049_33287070	1/1	c0001	660	327	86	54	153	6	26	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	c0002	660	1	0	0	1	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP6_chr17_80986841_81005133	1/1	c0001	606	405	70	77	196	18	42	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0002	606	12	12	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0003	606	9	7	2	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0004	606	5	0	0	5	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0005	606	3	3	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0006	606	2	0	0	2	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0007	606	1	0	0	1	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	c0008	606	1	0	1	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP7_chr8_23238637_23266999	1/1	c0001	1362	421	88	76	189	16	50	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0002	1362	4	0	0	4	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0003	1362	4	4	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0004	1362	4	2	2	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0005	1362	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0007	1362	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0008	1362	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	c0009	1362	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHM_chrX_85856180_86052558	1/1	c0001	1962	201	62	30	73	10	24	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0002	1962	30	1	8	17	3	1	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0003	1962	4	0	0	3	0	1	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0004	1962	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0005	1962	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0006	1962	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0007	1961	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0008	1962	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0009	1962	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0010	1960	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	c0011	1962	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHN1_chr2_174793809_175010381	1/1	c0001	1380	275	84	30	122	10	27	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	c0002	1380	1	0	0	0	0	1	copy fasta	CHN1	chr2	174793809	175010381
CHN2_chr7_29189775_29519328	1/1	c0001	1407	127	25	38	34	7	21	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0002	1407	59	30	5	20	0	4	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0003	1407	17	5	4	8	0	0	copy fasta	CHN2	chr7	29189775	29519328