JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHN2_chr7_29189775_29519328	0/0	c0004	1407	14	5	2	7	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0005	1407	6	2	0	3	0	1	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0006	1407	4	3	0	0	1	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0007	1407	3	3	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0008	1407	1	0	1	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHODL_chr21_18239833_18272370	1/1	c0001	822	394	93	73	171	16	39	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	c0002	822	4	3	1	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	c0003	822	1	0	0	0	0	1	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	c0004	822	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	c0005	822	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	c0006	822	1	0	0	1	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHORDC1_chr11_90195429_90228049	0/0	c0001	999	264	37	48	130	10	39	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	1/1	c0002	999	148	53	24	56	4	9	copy fasta	CHORDC1	chr11	90195429	90228049
CHP1_chr15_41226268_41286887	1/1	c0001	588	298	96	50	102	10	38	copy fasta	CHP1	chr15	41226268	41286887
CHP2_chr16_23750026_23763935	1/1	c0001	591	375	84	82	146	17	44	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0002	591	9	9	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0003	591	4	0	0	4	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0004	591	1	0	0	0	1	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0005	591	1	1	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0006	591	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	c0007	591	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHPF2_chr7_151227483_151243822	1/1	c0001	2319	181	44	34	64	12	25	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0002	2319	132	16	29	72	1	14	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0003	2319	17	1	6	7	2	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0004	2319	15	14	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0005	2319	6	5	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0006	2319	6	6	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0007	2319	4	0	0	0	0	4	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0008	2319	3	3	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0009	2319	3	0	0	3	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0010	2319	2	2	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0011	2319	2	0	0	0	1	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0012	2319	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0013	2319	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0014	2319	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0015	2319	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0016	2319	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0017	2319	1	0	0	0	0	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0018	2319	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0019	2319	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0020	2319	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0021	2319	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	c0022	2319	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF_chr2_219533954_219548809	0/1	c0001	2328	214	51	34	93	7	28	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0002	2328	64	6	21	31	4	2	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0003	2328	55	13	14	17	3	8	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0004	2328	18	0	2	16	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	1/0	c0005	2328	9	7	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0006	2328	7	6	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809