JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHPF_chr2_219533954_219548809	0/0	c0007	2328	7	0	2	5	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0008	2328	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0009	2328	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0010	2328	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0011	2328	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0012	2328	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0013	2328	1	1	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0014	2328	1	0	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0015	2328	1	0	0	0	0	1	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0016	2328	1	0	0	0	0	1	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0017	2328	1	1	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0018	2328	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0019	2328	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0020	2328	1	1	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0021	2328	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0022	2328	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0023	2328	1	0	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	c0024	2328	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPT1_chr12_101692640_101734074	0/0	c0001	1221	144	62	9	59	3	11	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0002	1221	104	6	20	63	4	11	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	1/1	c0003	1221	89	17	26	27	6	11	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0004	1221	37	2	11	22	1	1	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0005	1221	10	0	0	10	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0006	1221	9	0	1	8	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0007	1221	3	0	3	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0008	1221	2	2	0	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0009	1221	1	0	0	1	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0011	1221	1	0	0	1	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	c0012	1221	1	1	0	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHRAC1_chr8_140506322_140522154	1/1	c0001	396	389	89	71	165	15	47	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0002	396	26	1	5	18	1	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0003	396	3	3	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0004	396	2	2	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0005	396	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0006	396	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0007	396	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	c0008	396	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRDL1_chrX_110668856_110800817	1/1	c0001	1377	110	8	18	64	3	15	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	c0002	1377	53	41	6	1	4	1	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	c0003	1377	4	4	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	c0004	1377	3	3	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	c0006	1377	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL2_chr11_74691429_74736426	0/1	c0001	1290	110	3	23	74	3	6	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0002	1290	82	19	5	38	5	15	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	1/0	c0003	1290	57	15	8	22	3	8	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0004	1290	55	28	16	2	2	7	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0005	1290	25	9	0	13	0	3	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0006	1290	18	7	2	4	1	4	copy fasta	CHRDL2	chr11	74691429	74736426