JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRDL2_chr11_74691429_74736426	0/0	c0007	1290	15	6	2	5	0	2	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0008	1290	5	5	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0009	1290	3	3	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0010	1291	2	0	0	2	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0011	1291	2	0	0	2	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0012	1291	2	0	0	2	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0013	1290	2	0	0	0	0	2	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0014	1291	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0015	1291	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0016	1291	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0017	1290	1	0	1	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0018	1290	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0019	1290	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0020	1290	1	0	1	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0021	1290	1	0	0	0	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0022	1290	1	1	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0023	1290	1	0	0	0	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0024	1290	1	1	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0025	1290	1	0	0	0	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0026	1290	1	1	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	c0027	1290	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRD_chr3_184375054_184394829	1/0	c0001	2868	198	39	29	98	8	23	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0002	2868	59	4	19	32	0	4	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0003	2868	45	8	11	11	6	9	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0004	2868	35	4	11	19	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0005	2868	10	10	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0006	2868	8	7	0	0	1	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0007	2868	8	7	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0008	2868	8	2	0	6	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0009	2868	7	2	1	0	0	4	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0010	2868	6	4	0	2	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/1	c0011	2868	6	0	0	4	1	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0012	2868	5	4	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0013	2868	4	0	4	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0014	2868	3	2	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0015	2868	2	1	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0016	2868	2	0	0	2	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0017	2868	2	0	2	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0018	2868	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0019	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0020	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0021	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0022	2868	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0023	2868	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0024	2868	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0025	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0026	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0027	2868	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0028	2868	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0029	2868	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829